Publications

Editorials

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Marc Streit, Oliver Bimber
Special Issue on Visual Analytics
IEEE Computer, 46, 7, 2013.

Jan Aerts, G. Elisabeta Marai, Kay Nieselt, Cydney Nielsen, Marc Streit, Daniel Weiskopf
Highlights from the 5th Symposium on Biological Data Visualization: Part 1
BMC Bioinformatics, 16(Suppl 11):S1, 2015.

Jan Aerts, G. Elisabeta Marai, Kay Nieselt, Cydney Nielsen, Marc Streit, Daniel Weiskopf
Highlights from the 5th Symposium on Biological Data Visualization: Part 2
BMC Proceedings, 9(Suppl 6):S1, 2015.

Commentaries

Peer-Reviewed Journal and Conference Papers

TACO screenshot

Christina Niederer, Holger Stitz, Reem Hourieh, Florian Grassinger, Wolfgang Aigner, Marc Streit
TACO: Visualizing Changes in Tables Over Time
IEEE Transactions on Visualization and Computer Graphics (InfoVis '17), 2017 (to appear).
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Davide Ceneda, Theresia Gschwandtner, Thorsten May, Silvia Miksch, Hans-Jörg Schulz, Marc Streit, Christian Tominski
Characterizing Guidance in Visual Analytics
IEEE Transactions on Visualization and Computer Graphics (VAST '16), 23(1), pp. 111-120, 2017.
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Holger Stitz, Samuel Gratzl, Wolfgang Aigner, Marc Streit
ThermalPlot: Visualizing Multi-Attribute Time-Series Data Using a Thermal Metaphor
IEEE Transactions on Visualization and Computer Graphics, 22(12), pp. 2594-2607, 2016.
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Stephan Pajer, Marc Streit, Thomas Torsney-Weir, Florian Spechtenhauser, Torsten Möller, Harald Piringer
WeightLifter: Visual Weight Space Exploration for Multi-Criteria Decision Making
IEEE Transactions on Visualization and Computer Graphics (InfoVis '16), 23(1), pp. 611-620, 2017.
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Pathfinder screenshot

Christian Partl, Samuel Gratzl, Marc Streit, Anne Mai Wassermann, Hanspeter Pfister, Dieter Schmalstieg, Alexander Lex
Pathfinder: Visual Analysis of Paths in Graphs
Computer Graphics Forum (EuroVis '16), vol. 35, no. 3, pp. 71-80, 2016.
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Honorable Mention Award 
CLUE screenshot

Samuel Gratzl, Alexander Lex, Nils Gehlenborg, Nicola Cosgrove, Marc Streit
From Visual Exploration to Storytelling and Back Again
Computer Graphics Forum (EuroVis '16), vol. 35, no. 3, pp. 491-500, 2016.
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AVOCADO screenshot

Holger Stitz, Stefan Luger, Marc Streit, Nils Gehlenborg
AVOCADO: Visualization of Workflow-Derived Data Provenance for Reproducible Biomedical Research
Computer Graphics Forum (EuroVis '16), vol. 35, no. 3, pp. 481-490, 2016.
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Holger Stitz, Samuel Gratzl, Michael Krieger, Marc Streit
CloudGazer: A Divide-and-Conquer Approach to Monitoring and Optimizing Cloud-Based Networks
Proceedings of IEEE Pacific Visualization Symposium (PacificVis '15), pp. 175-182, 2015.
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Thomas Mühlbacher, Harald Piringer, Samuel Gratzl, Michael Sedlmair, Marc Streit
Opening the Black Box: Strategies for Increased User Involvement in Existing Algorithm Implementations
IEEE Transactions on Visualization and Computer Graphics (VAST '14), 20(12), pp. 1643-1652, 2014.
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Contour screenshot

Christian Partl, Alexander Lex, Marc Streit, Hendrik Strobelt, Anne-Mai Wassermann, Hanspeter Pfister, Dieter Schmalstieg
ConTour: Data-Driven Exploration of Multi-Relational Datasets for Drug Discovery
IEEE Transactions on Visualization and Computer Graphics (VAST '14), 20(12), pp. 1883-1892, 2014.
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Domino screenshot

Samuel Gratzl, Nils Gehlenborg, Alexander Lex, Hanspeter Pfister, Marc Streit
Domino: Extracting, Comparing, and Manipulating Subsets across Multiple Tabular Datasets
IEEE Transactions on Visualization and Computer Graphics (InfoVis '14), 20(12), pp. 2023-2032, 2014.
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IEEE InfoVis 2014 Honorable Mention 
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Thomas Geymayer, Markus Steinberger, Alexander Lex, Marc Streit, Dieter Schmalstieg
Show me the Invisible: Visualizing Hidden Content
Proceedings of the SIGCHI Conference on Human Factors in Computing Systems (CHI ’14), pp. 3705-3714, 2014.
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ACM CHI 2014 Honorable Mention Award 
DualMeetsCaleydo screenshot

Cagatay Turkay, Alexander Lex, Marc Streit, Hanspeter Pfister, Helwig Hauser
Characterizing Cancer Subtypes using the Dual Analysis Approach in Caleydo StratomeX
IEEE Computer Graphics and Applications, 34(2), pp. 38–47, 2014.
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furby screenshot

Marc Streit, Samuel Gratzl, Michael Gillhofer, Andreas Mayr, Andreas Mitterecker, Sepp Hochreiter
Furby: Fuzzy Force-Directed Bicluster Visualization
BMC Bioinformatics, 15(Suppl 6), p. S4, 2014.
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LineUp screenshot

Samuel Gratzl, Alexander Lex, Nils Gehlenborg, Hanspeter Pfister, Marc Streit
LineUp: Visual Analysis of Multi-Attribute Rankings
IEEE Transactions on Visualization and Computer Graphics (InfoVis '13), 19(12), pp. 2277–2286, 2013.
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IEEE InfoVis 2013 Best Paper Award 
Entourage screenshot

Alexander Lex, Christian Partl, Denis Kalkofen, Marc Streit, Anne-Mai Wassermann, Samuel Gratzl, Dieter Schmalstieg, Hanspeter Pfister
Entourage: Visualizing Relationships between Biological Pathways using Contextual Subsets
IEEE Transactions on Visualization and Computer Graphics (InfoVis '13), 19(12), pp. 2536–2545, 2013.
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enRoute screenshot

Clemens Holzhüter, Alexander Lex, Dieter Schmalstieg, Hans-Jörg Schulz, Heidrun Schumann, Marc Streit
Visualizing Uncertainty in Biological Expression Data
Proceedings of the SPIE Conference on Visualization and Data Analysis (VDA '12), pp. 82940O, 2012.
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LineUp screenshot

Marc Streit, Hans-Jörg Schulz, Alexander Lex, Dieter Schmalstieg, Heidrun Schumann
Model-Driven Design for the Visual Analysis of Heterogeneous Data
IEEE Transactions on Visualization and Computer Graphics, 18(6), pp. 998-1010, 2012.
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Rostislav Klebnikov, Bernhard Kainz, Markus Steinberger, Marc Streit, Dieter Schmalstieg
Procedural Texture Synthesis for Zoom-Independent Visualization of Multivariate Data
Computer Graphics Forum (EuroVis '12), 31(3), pp. 1355-1364, 2012.
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enRoute screenshot

Christian Partl, Alexander Lex, Marc Streit, Denis Kalkofen, Karl Kashofer, Dieter Schmalstieg
enRoute: Dynamic Path Extraction from Biological Pathway Maps for In-Depth Experimental Data Analysis
Proceedings of the IEEE Symposium on Biological Data Visualization (BioVis ’12), pp. 107–114., 2012.
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IEEE BioVis 2012 Best Paper Award 
VisBricks screenshot

Thomas Geymayer, Alexander Lex, Marc Streit, Dieter Schmalstieg
Visualizing the Effects of Logically Combined Filters
Proceedings of the Conference on Information Visualisation (IV ’2011), pp. 47-52, 2011.
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VisBricks screenshot

Alexander Lex, Hans-Jörg Schulz, Marc Streit, Christian Partl, Dieter Schmalstieg
VisBricks: Multiform Visualization of Large, Inhomogeneous Data
IEEE Transactions on Visualization and Computer Graphics (InfoVis '11), 17(12), pp. 2291-2300, 2011.
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LineUp screenshot

Markus Steinberger, Manuela Waldner, Marc Streit, Alexander Lex, Dieter Schmalstieg
Context-Preserving Visual Links
IEEE Transactions on Visualization and Computer Graphics (InfoVis '11), 17(12), pp. 2249-2258, 2011.
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IEEE InfoVis 2011 Best Paper Award 
VisBricks screenshot

Alexander Lex, Marc Streit, Ernst Kruijff, Dieter Schmalstieg
Caleydo: Design and Evaluation of a Visual Analysis Framework for Gene Expression Data in its Biological Context
Proceedings of IEEE Pacific Visualization Symposium (PacificVis '10), pp. 57-64, 2010.
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Matchmaker screenshot

Alexander Lex, Marc Streit, Christian Partl, Karl Kashofer, Dieter Schmalstieg
Comparative Analysis of Multidimensional, Quantitative Data
IEEE Transactions on Visualization and Computer Graphics (InfoVis '2010), 16(6), pp. 1027-1035, 2010.
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Manuela Waldner, Werner Puff, Alexander Lex, Marc Streit, Dieter Schmalstieg
Visual Links across Applications
Proceedings of the Conference on Graphics Interface (GI '10), pp. 129-136, 2010.
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GI 2010 Best Student Paper Award 
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Heimo Müller, Robert Reihs, Stefan Sauer, Kurt Zatloukal, Marc Streit, Alexander Lex, Bernhard Schlegl, Dieter Schmalstieg
Connecting Genes with Diseases
Proceedings of the Conference on Information Visualisation (IV ’2009), 2009.
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Marc Streit, Hans-Jörg Schulz, Dieter Schmalstieg, Heidrun Schumann
Towards Multi-User Multi-Level Interaction
Proceedings of the Workshop on Collaborative Visualization on Interactive Surfaces (CoVIS '09), in conjunction with VisWeek, ISSN 1862-5207, pp. 5-8, 2009.
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Manuela Waldner, Alexander Lex, Marc Streit, Dieter Schmalstieg
Design Considerations for Collaborative Information Workspaces in Multi-Display Environments
Proceedings of the Workshop on Collaborative Visualization on Interactive Surfaces (CoVIS '09), in conjunction with VisWeek, ISSN 1862-5207, pp. 36-39, 2009.
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Marc Streit, Alexander Lex, Heimo Müller, Dieter Schmalstieg
Gaze-Based Focus Adaption in an Information Visualization System
Proceedings of the Conference on Computer Graphics and Visualization and Image Processing (CGVCVIP '09), 2009.
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Marc Streit, Alexander Lex, Michael Kalkusch, Kurt Zatloukal, Dieter Schmalstieg
Caleydo: Connecting Pathways with Gene Expression
Bioinformatics, Oxford Journals, 25(20), pp. 2760-2761, 2009.
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Heimo Müller, Kurt Zatloukal, Marc Streit, Dieter Schmalstieg
Interactive Exploration of Medical Data Sets
Proceedings of the Conference on BioMedical Visualisation, pp. 29-35, 2008.
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Jukebox screenshot

Marc Streit, Michael Kalkusch, Karl Kashofer, Dieter Schmalstieg
Navigation and Exploration of Interconnected Pathways
Computer Graphics Forum (EuroVis '08), 27(3), pp. 951-958, 2008.
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Marc Streit
Interactive Visualization of Complex Graphs
Proceedings of the Central European Seminar on Computer Graphics (CESCG '07), 2007.
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Rupert C. Ecker, Radu Rogojanu, Marc Streit, Katja Österreicher, {"Georg E. Steiner"=>nil}
An Improved Method for Discrimination of Cell Populations in Tissue Sections Using Microscopy-Based Multicolor Tissue Cytometry
Journal of Cytometry Part A, 69A(3), pp. 119-123, 2006, 2006.
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Marc Streit, Rupert C. Ecker, Katja Österreicher, Georg E. Steiner, Horst Bischof, Christine Bangert, Tamara Kopp, Radu Rogojanu
3D Parallel Coordinate Systems - A New Data Visualization Method in the Context of Microscopy-Based Multicolor Tissue Cytometry
Journal of Cytometry Part A, 69A(7), pp. 601-611, 2006, 2006.
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Theses

PhD Thesis
Guided Visual Analysis of Heterogeneous Data
Graz University of Technology, March 2011
Supervision: Prof. Dieter Schmalstieg

Master's Thesis
Metabolic Pathways Influencing Gene-Expression Analysis
Graz University of Technology, June 2007
Supervision: Prof. Dieter Schmalstieg / Michael Kalkusch

Bachelor's Thesis
Intuitive Data Visualization and Interactive Data Meta-Evaluation in Automated Multi-Parameter Tissue Cytometry
Graz University of Technology, June 2005
Supervision: Prof. Horst Bischof

Extended Abstracts and Posters

Nils Gehlenborg, Shannan Ho Sui, Ilya Sytchev, Stefan Luger, Fritz Lekschas, Richard W Park, Jennifer Marx, Scott Ouellette, David R Jones, Anton Xue, Psalm Haseley, Marc Streit, Winston Hide, Peter J. Park
Reproducible Research in the Cloud with the Refinery Platform
Bioinformatics Open Source Conference (BOSC 2016), Orlando, FL, USA, 2017.


Holger Stitz, Samuel Gratzl, Harald Piringer, Marc Streit
Provenance-Based Visualization Retrieval
IEEE Conference on Visual Analytics Science and Technology (VAST ’17), Phoenix, AZ, USA, 2017.


Katarina Furmanova, Miroslava Jaresova, Bikram Kawan, Holger Stitz, Martin Ennemoser, Samuel Gratzl, Alexander Lex, Marc Streit
Taggle: Scaling Table Visualization through Aggregation
IEEE Conference on Information Visualization (InfoVis ’17), Phoenix, AZ, USA, 2017.


Reem Hourieh, Holger Stitz, Nils Gehlenborg, Marc Streit
TaCo: Comparative Visualization of Large Tabular Data
Poster Compendium of the Eurographics/IEEE Symposium on Visualization (EuroVis ’16), Groningen, Netherlands, 2016.


Holger Stitz, Samuel Gratzl, Harald Rogner, Marc Streit
Visual Evaluation of Cloud Infrastructure Performance Predictions
IEEE Conference on Information Visualization (InfoVis ’16), Baltimore, MD, USA, 2016.


Stefan Luger, Holger Stitz, Samuel Gratzl, Nils Gehlenborg, Marc Streit
Interactive Visualization of Provenance Graphs for Reproducible Biomedical Research
IEEE Conference on Information Visualization (InfoVis ’15), Chicago, IL, USA, 2015.


Holger Stitz, Samuel Gratzl, Wolfgang Aigner, Marc Streit
ThermalPlot: Visualizing Multi-Attribute Time-Series Data Using a Thermal Metaphor
IEEE Conference on Information Visualization (InfoVis ’15), Chicago, IL, USA, 2015.


Samuel Gratzl, Nils Gehlenborg, Alexander Lex, Hendrik Strobelt, Christian Partl, Marc Streit
Caleydo Web: An Integrated Visual Analysis Platform for Biomedical Data
IEEE Conference on Information Visualization (InfoVis ’15), Chicago, IL, USA, 2015.


Holger Stitz, Samuel Gratzl, Stefan Luger, Nils Gehlenborg, Marc Streit
Transparent Layering for Visualizing Dynamic Graphs Using the Flip Book Metaphor
IEEE Conference on Information Visualization (InfoVis ’14), Paris, France, 2014.


Christian Partl, Alexander Lex, Marc Streit, Hendrik Strobelt, Anne-Mai Wassermann, Hanspeter Pfister, Dieter Schmalstieg
ConTour: Data-Driven Exploration of Multi-Relational Datasets for Drug Discovery
Symposium on Biological Data Visualization (BioVis '14), ISMB, Boston, MA, USA, 2014.


Nils Gehlenborg, Richard Park, Ilya Sytchev, Psalm Haseley, Stefan Luger, Anton Xue, Marc Streit, Shannan Ho Sui, Winston Hide, Peter J. Park
Refinery Platform: A Foundation for Integrative Data Visualization Tools
Symposium on Biological Data Visualization (BioVis '14), ISMB, Boston, MA, USA, 2014.


Hans-Jörg Schulz, Marc Streit, Thorsten May, Christian Tominski
Towards a Characterization of Guidance in Visualization
IEEE Conference on Information Visualization (InfoVis ’13), Atlanta, GA, USA, 2013.


Marc Streit, Alexander Lex, Christian Partl, Dieter Schmalstieg, Peter J. Park, Nils Gehlenborg
StratomeX: Guided Visual Exploration for Tumor Subtype Identification in The Cancer Genome Atlas
The Cancer Genome Atlas' 2nd Annual Scientific Symposium, Crystal City, VA, USA, 2012.


Alexander Lex, Marc Streit, Hans-Jörg Schulz, Christian Partl, Dieter Schmalstieg, Peter J. Park, Nils Gehlenborg
StratomeX: Enabling Visualization-Driven Cancer Subtype Analysis
IEEE Symposium on Biological Data Visualization (BioVis '12), Seattle, WA, USA, 2012.


Marc Streit, Alexander Lex, Hans-Jörg Schulz, Christian Partl, Dieter Schmalstieg, Peter J. Park, Nils Gehlenborg
Guided Visual Analysis for the Identification of Cancer Subtypes
The Cancer Genome Atlas’ Semi-Annual Steering Committee Meeting, Houston, TX, US, 2012.


Alexander Lex, Marc Streit, Hans-Jörg Schulz, Christian Partl, Dieter Schmalstieg, Peter J. Park, Nils Gehlenborg
StratomeX - Integrative Visualization of Tumor Subtypes in Cancer Genomics Data Sets
EMBO Workshop on Visualizing Biological Data (VIZBI '12), Heidelberg, Germany, 2012.


Marc Streit, Alexander Lex, Helmut Doleischakea, Dieter Schmalstieg
Does Software Engineering Pay Off for Research? Lessons Learned from the Caleydo Project
Eurographics Workshop on Visual Computing for Biomedicine (VCBM '10), Leipzig, Germany, 2010.


Gudrun Schmidt-Gann, Katharina Schmid, Monika Uehlein, Joachim Struck, Andreas Bergmann, Dieter Schmalstieg, Marc Streit, Alexander Lex, Douw G. van der Nest, Martijn van Griensven, Heinz Redl
Gene- and Protein Expression Profiling in Liver in a Sepsis-Baboon Model
Conference on SHOCK, 31, 4-4, San Antonio, Texas, USA, 2009.

Marc Streit, Alexander Lex, Dieter Schmalstieg, Heimo Müller, Stefan Sauer, Wilhelm Steiner, Kurt Zatloukal
CALEYDO
ZMF.Day (Center for Medical Research), Graz, Austria, 2008.


Manuela Waldner, Christian Pirchheim, Marc Streit, Dieter Schmalstieg
Multiple View Visualization On A Multi Display Setup
International Workshop on Giga-Pixel Displays & Visual Analytics (GIANT '08), Leeds, UK, 2008.


Marc Streit, Michael Kalkusch, Dieter Schmalstieg
Interactive Visualization of Metabolic Pathways
IEEE Conference on Visualization (Vis '07), Sacramento, CA, USA, 2007.